Hi Ralph,
It sounds like you got your floor fit to the SS!! I would do like the others said. Butt welding is really the best and gives the opportunity to grind the area completely smooth. Thats what I did when I patched up my floor.
You may want to practice a little bit to get the feel so you know you're getting good penetration. My welding instructor always said that when you pull the trigger it should sound like bacon frying! In other words, just an even sizzle with no popping.
I'm not sure how you are installing the floor, but you'll most likely need to use a plug weld. It is the perfect way to recreate the spot welds that are used all along the outter edge of the floor panel and elsewhere. Its basically two pieces of metal sandwiched on top of each other with the exception that the top piece has a hole drilled in it (I used 3/8" holes). Just start your bead on the outter edge of the circle and spiral in towards the center, making a continuous bead. A very strong weld that looks great!
I would also use some 3M weld-through primer. Its great for what you'll be doing. Just shake it VERY, VERY well and keep the spray tip clean. Its about $20 per can but well worth it.
Best of luck!!
Ross